BindScout

by arvbanco.huggingface.arvban/bindscout

Per-residue BindCraft targetability in PDB B-factors

  • Remote endpoint
  • 2 tools
  • MIT

Uptime

Checked  · every day

98.98%from 5 days of checks

Up without downtime on 3 of 4 days with data; down 45 minutes in all, on 30 October.

  • No downtime
  • Degraded
  • Down over 5 minutes
  • No data
  • Not checked yet

Response time

Median 1251 ms, slowest 5% 1296 ms for the handshake and the tool list, over 30 days.

1500 ms750 ms0

How far each check got

  • Reached the address 92.3%
  • Completed the handshake 30.7%
  • Listed its tools 30.7%

2 tools at the last answer.

Every day
DayResultChecksMedian
3 Nov (today)No verdict yet0–
2 NovNo downtime1of 11212 ms
1 NovNo downtime1of 11251 ms
31 OctNo downtime1of 11228 ms
30 OctDown 45 minutes101276 ms

A failure counts as down time only when a second check five minutes later fails too. How we check

Connect to the publisher's own endpoint

Add to ~/.continue/config.yaml:

mcpServers:
  - name: "bindscout"
    type: sse
    url: "https://arvban-bindscout.hf.space/gradio_api/mcp/sse"
For agents: the install prompt

Every step above as one Markdown text, for an assistant installing it for you.

# Install the MCP server BindScout (`co.huggingface.arvban/bindscout`)

Its page: https://plug.directory/servers/co.huggingface.arvban/bindscout

It runs on the publisher's servers; the client connects to its URL.

Use the section for the person's client.

## Claude Desktop

Paste into Settings › Connectors › Add custom connector:

```text
https://arvban-bindscout.hf.space/gradio_api/mcp/sse
```

## Claude Code

Run in a terminal:

```sh
claude mcp add --transport sse bindscout https://arvban-bindscout.hf.space/gradio_api/mcp/sse
```

## Cursor, Devin Desktop, LM Studio, Gemini CLI, oterm, ECA

Merge into the place for the person's client:

- Cursor: ~/.cursor/mcp.json
- Devin Desktop: ~/.config/devin/mcp_config.json
- LM Studio: mcp.json (Program › Install › Edit mcp.json)
- Gemini CLI: ~/.gemini/settings.json
- oterm: config.json in oterm's data folder (~/Library/Application Support/oterm on macOS, ~/.local/share/oterm on Linux, %APPDATA%\oterm on Windows)
- ECA: ~/.config/eca/config.json (global) or .eca/config.json in the project

```json
{
  "mcpServers": {
    "bindscout": {
      "url": "https://arvban-bindscout.hf.space/gradio_api/mcp/sse"
    }
  }
}
```

## VS Code

Merge into .vscode/mcp.json:

```json
{
  "servers": {
    "bindscout": {
      "type": "sse",
      "url": "https://arvban-bindscout.hf.space/gradio_api/mcp/sse"
    }
  }
}
```

## Zed

This server's endpoint speaks only SSE, which this client's documentation does not list among its transports; use another client for it.

## Cline, AnythingLLM, Augment Code

Merge into the place for the person's client:

- Cline: cline_mcp_settings.json (MCP Servers › Configure › Configure MCP Servers)
- AnythingLLM: anythingllm_mcp_servers.json in the AnythingLLM storage plugins directory
- Augment Code: Augment Settings Panel – MCP section – Import from JSON (VS Code extension)

```json
{
  "mcpServers": {
    "bindscout": {
      "type": "sse",
      "url": "https://arvban-bindscout.hf.space/gradio_api/mcp/sse"
    }
  }
}
```

## Continue

Merge into ~/.continue/config.yaml:

```yaml
mcpServers:
  - name: "bindscout"
    type: sse
    url: "https://arvban-bindscout.hf.space/gradio_api/mcp/sse"
```

## Goose

This server's endpoint speaks only SSE, which this client's documentation does not list among its transports; use another client for it.

## Codex

This server's endpoint speaks only SSE, which this client's documentation does not list among its transports; use another client for it.

## mcp-client-cli, TUUI, BoltAI, Bob Shell, Kiro, Kiro CLI

This server's endpoint speaks only SSE, which this client's documentation does not list among its transports; use another client for it.

## Agenvoy

This server's endpoint speaks only SSE, which this client's documentation does not list among its transports; use another client for it.

## Amp

Merge into ~/.config/amp/settings.json (user) or .amp/settings.json (workspace):

```json
{
  "amp.mcpServers": {
    "bindscout": {
      "url": "https://arvban-bindscout.hf.space/gradio_api/mcp/sse"
    }
  }
}
```

Then restart the client, or reload its MCP servers, and ask it to list the server's tools to confirm it started.

Tools 2

  • bindscout_score If a user passes a file as an input, use the upload_file_to_gradio tool, if present, to upload the file to the gradio app and create a Gradio File Input. Then use the returned path as the input to the tool
  • bindscout_score_target BindScout: score a protein target for BindCraft targetability, per residue. Returns the residues BindCraft designs are most likely to bury, ranked. The score is local surface-patch coverage: how frequently independent successful BindCraft trajectories would completely cover that residue's 7 A patch. Read it as a ranking of candidate sites within this target, not as an absolute probability of design success. BindScout is specific to the BindCraft design and filtering procedure in its training data, which is mainly single, structurally coherent protein domains. Returns: A text report: the peak score, how many residues clear 0.5 and 0.2, and the, top-ranked residues with their score, 7 A patch size and relative solvent, accessibility.

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